Leaving aside all of the scope traces, how does it sound? Did you notice a difference between resistive-load and choke-load?
Tangent question: when you are comparing 1st stage and 2nd stage waveforms, are you aligning both resulting waveforms at their zero-crossing point, or at the bottom of their negative peaks (valleys)? If the latter, I think this might exaggerate the degree by which the top of the 2nd stage waveform is smaller than the first -- i.e., I wonder whether the lower voltage output of the 2nd stage is more symmetrical.
cheers, Derek